PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002571G0300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 250aa    MW: 27601.9 Da    PI: 6.3492
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002571G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-1971121255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp     k +r++lg+++ta eAa+a+++a+ +l+g
  PH01002571G0300  71 RYRGVRQRP-WGKFAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFRLRG 121
                      7********.**********8...4445*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.72471129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3271130IPR001471AP2/ERF domain
SMARTSM003805.8E-3871135IPR001471AP2/ERF domain
PfamPF008471.5E-1371121IPR001471AP2/ERF domain
CDDcd000182.40E-3071130No hitNo description
SuperFamilySSF541715.62E-2371130IPR016177DNA-binding domain
PRINTSPR003678.0E-147283IPR001471AP2/ERF domain
PRINTSPR003678.0E-14111131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAFLHQHLDL IRAHLLDDHH HHGDDAGSDF SASTPSPLGW RPAPALSVSL PPKQQWAPPQ  60
EYCYSEEDFR RYRGVRQRPW GKFAAEIRDP ARKGARVWLG TYDTAVEAAR AYDRAAFRLR  120
GSKAILNFPN EVGHTAGQWD PPVPLAAAMT TGGKRPRPDE RTQEELSMRE VKKERVLEEE  180
EAANSADLAA ASWDGMASAS AAIGGGMDFW EEMEELKGIC SLPPLSPLSQ HPHFAFPQLS  240
VSRSIAAGLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-2872132666ATERF1
2gcc_A2e-2872132666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947120.0FP094712.1 Phyllostachys edulis cDNA clone: bphyem113i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464924.11e-66hypothetical protein SORBIDRAFT_01g028930
SwissprotQ404785e-43ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLF2DBM38e-72F2DBM3_HORVD; Predicted protein
STRINGMLOC_70692.15e-70(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-25ethylene responsive element binding factor 5